Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs55664415 | chr3:52124885 | G/A | 8.21E-5 | 483 | 16.02 | 14.9 | 17.72 | KM Plot |
| THCA | rs55666905 | chr10:81953639 | C/T | 0.000114 | 488 | 15.93 | 16.65 | 9.77 | KM Plot |
| THCA | rs55670919 | chr17:45862015 | C/T | 3.45E-5 | 488 | 15.15 | 17.07 | 16.3 | KM Plot |
| THCA | rs55690691 | chr10:81658942 | G/T | 0 | 482 | 15.67 | 17.23 | 5.92 | KM Plot |
| THCA | rs55691648 | chr15:83836050 | G/A | 7.44E-6 | 479 | 16.27 | 15.9 | 8.9 | KM Plot |
| THCA | rs55702258 | chr13:24890752 | G/A | 0.000316 | 486 | 15.17 | 17.8 | 17.08 | KM Plot |
| THCA | rs55708527 | chr2:29075170 | T/C | 8.83E-5 | 477 | 14.3 | 16.67 | 15.97 | KM Plot |
| THCA | rs55712842 | chr10:81981050 | T/C | 8.53E-5 | 482 | 16.08 | 15.87 | 9.77 | KM Plot |
| THCA | rs55715234 | chr1:156898242 | C/T | 9.68E-7 | 469 | 16.63 | 14.8 | 11.3 | KM Plot |
| THCA | rs55721826 | chr11:72019162 | A/G | 4.44E-6 | 486 | 16.22 | 14.7 | 11.77 | KM Plot |
| THCA | rs55723250 | chr16:2934144 | T/C | 0.000137 | 487 | 15.2 | 17 | 15.4 | KM Plot |
| THCA | rs55724241 | chr3:139262770 | T/C | 4.49E-6 | 489 | 15.9 | 16.93 | 14.53 | KM Plot |
| THCA | rs55744925 | chr14:36137394 | A/G | 5.08E-6 | 490 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs55746248 | chr5:96230844 | G/A | 3.27E-6 | 489 | 15.83 | 16.92 | 17.7 | KM Plot |
| THCA | rs55747998 | chr11:133840793 | C/T | 8.91E-5 | 487 | 16.02 | 15.9 | 8.73 | KM Plot |